SNP Profiles of SPEC 160 /9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
1._RUQ_51	_	_	_	_	_	_	AA	_	_	_	_	_	_	_
2._RUQ_51	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
3._SPEC_160_/9	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
4._SPEC_160_/9	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
5._SPEC_160_/9	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
6._SPEC_160_/9	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
7._SPEC_160_/9	_	_	_	_	_	CT	AA	_	AA	_	_	_	_	_
8._GC-08-267-8-39	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
9._GC-08-267-8-39	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
10._GC-08-267-8-39	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
11._GC-08-267-8-39	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
12._GC-08-267-8-39	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
13._SPEC_160_/9	_	_	_	_	_	_	AA	_	AA	_	_	_	_	_
14._RUQ_51	_	_	_	_	_	CT	_	GT	_	_	AG	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	GG	AG	AA	GG	AA	AG	AC	AG	CC	GG	AC	AG	AG
1._RUQ_51	_	_	_	_	_	_	_	AC	_	CG	_	_	_	_
2._RUQ_51	_	CC	_	AA	_	TT	_	AC	CT	_	GG	GT	CT	CT
3._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	CG	GG	GT	CT	CT
4._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	CG	GG	GT	CT	CT
5._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	CG	GG	GT	CT	CT
6._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	CG	GG	GT	CT	CT
7._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	CG	GG	GT	CT	CT
8._GC-08-267-8-39	CT	CC	TT	AA	GG	TT	CT	AC	CT	CG	GG	GT	CT	CT
9._GC-08-267-8-39	CT	CC	TT	AA	GG	TT	CT	AC	CT	CG	GG	GT	CT	CT
10._GC-08-267-8-39	CT	CC	TT	AA	GG	TT	CT	AC	CT	CG	GG	GT	CT	CT
11._GC-08-267-8-39	CT	CC	TT	AA	GG	TT	CT	AC	CT	CG	GG	GT	CT	CT
12._GC-08-267-8-39	CT	CC	TT	AA	GG	TT	CT	AC	CT	CG	GG	GT	CT	CT
13._SPEC_160_/9	_	CC	_	AA	_	TT	_	AC	CT	GG	GG	GT	CT	_
14._RUQ_51	_	_	CT	_	_	_	CT	AC	CT	CG	GG	GT	CT	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG	AT
1._RUQ_51	_	_	_	_	AG	_	_	_	_	_	_	AG	_	_
2._RUQ_51	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
3._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
4._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
5._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
6._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
7._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
8._GC-08-267-8-39	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
9._GC-08-267-8-39	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
10._GC-08-267-8-39	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
11._GC-08-267-8-39	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
12._GC-08-267-8-39	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
13._SPEC_160_/9	_	_	AC	CG	AG	_	CT	GG	_	_	AT	_	_	AT
14._RUQ_51	_	AG	AC	CG	AG	_	CT	_	_	_	_	AG	AG	AT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	AG	AG	GG	AT	CG	GG	CC	CC	GG	AC	AA	CC	AC
1._RUQ_51	_	_	_	_	_	_	_	_	AC	_	_	_	CC	AC
2._RUQ_51	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
3._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
4._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
5._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
6._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
7._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	GT	_	CC	AC
8._GC-08-267-8-39	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC	AC
9._GC-08-267-8-39	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC	AC
10._GC-08-267-8-39	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC	AC
11._GC-08-267-8-39	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC	AC
12._GC-08-267-8-39	CT	AG	AG	GG	AT	CG	_	CC	CC	GG	GT	AA	CC	AC
13._SPEC_160_/9	_	_	_	GG	_	_	_	_	CC	_	_	_	CC	AT
14._RUQ_51	_	_	_	_	_	CG	_	_	CC	_	GT	_	CC	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	GG	GG	AG	AG	AC	AG	AG	AA	AC	AC	AC	CC	AG
1._RUQ_51	_	CC	_	_	_	GT	AG	_	_	_	_	AC	TT	_
2._RUQ_51	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
3._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
4._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
5._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
6._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
7._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
8._GC-08-267-8-39	CT	CC	CC	AG	AG	GT	AG	CT	TT	GT	GT	AC	GG	AA
9._GC-08-267-8-39	CT	CC	CC	AG	AG	GT	AG	CT	TT	GT	GT	AC	GG	AA
10._GC-08-267-8-39	CT	CC	CC	AG	AG	GT	AG	CT	TT	GT	GT	AC	GG	AA
11._GC-08-267-8-39	CT	CC	CC	AG	AG	GT	AG	CT	TT	GT	GT	AC	GG	AA
12._GC-08-267-8-39	CT	CC	CC	AG	AG	GT	AG	CT	TT	GT	GT	AC	GG	AA
13._SPEC_160_/9	_	_	CC	_	_	GT	_	_	_	_	_	_	_	_
14._RUQ_51	_	CC	CC	_	_	GT	AG	CT	_	_	GT	AC	_	_

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CG	GG	GG	AG	CC	AA	GG	AG	AA	GG	AG	X_X	X_X	X_X
1._RUQ_51	CG	_	_	AG	_	_	_	_	_	_	AG	X_X	X_X	X_X
2._RUQ_51	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
3._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
4._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
5._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
6._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
7._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	AA	CC	AG	X_X	X_X	X_X
8._GC-08-267-8-39	CG	CC	CC	AG	CC	TT	GG	CT	AA	CC	AG	X_X	X_X	X_X
9._GC-08-267-8-39	CG	CC	CC	AG	CC	TT	GG	CT	AA	CC	AG	X_X	X_X	X_X
10._GC-08-267-8-39	CG	CC	CC	AG	CC	TT	GG	CT	AA	CC	AG	X_X	X_X	X_X
11._GC-08-267-8-39	CG	CC	CC	AG	CC	TT	GG	CT	AA	CC	AG	X_X	X_X	X_X
12._GC-08-267-8-39	CG	CC	CC	AG	CC	TT	GG	CT	AA	CC	AG	X_X	X_X	X_X
13._SPEC_160_/9	CG	CC	_	_	_	TT	GG	_	_	CC	_	X_X	X_X	X_X
14._RUQ_51	CG	CC	_	-	CC	_	_	_	_	_	AG	X_X	X_X	X_X

Input profile: SPEC_160_/9 RUQ_51

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._SPEC_160_/9 RUQ_51

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._SPEC_160_/9 RUQ_51

57.6 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._SPEC_160_/9

57.4 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._SPEC_160_/9

57.4 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

5._SPEC_160_/9

57.4 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

6._SPEC_160_/9

57.4 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

7._SPEC_160_/9

57.4 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

8._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._SPEC_160_/9

55.2 %
29 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña, Lot 8, Row 24 4_6

Dapeng Zhang, 2016

14._SPEC_160_/9 RUQ_51

54.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1270	17	TcSNP1309	18	TcSNP1350	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998